Package index
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LogTibble - LogTibble
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STCMToCDMTables() - Convert Source to Concept Map to CDM Tables
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appendUsagiFileToSTCMtable() - Append Usagi File to Source to Concept Map Table
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autoFixDatabaseCodeCountsFile() - autoFixDatabaseCodeCountTable
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buildStatusDashboard() - Build Status Dashboard
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buildUpdateStatusMd() - Build Update Status Markdown
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buildValidationStatusMd() - Build Validation Status Markdown
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buildVocabulariesAll() - Run All Validation and Upload Steps
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calculateMappingStatus() - calculateMappingStatus
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conceptRelationshipToAncestorTables() - Convert CONCEPT_RELATIONSHIP to CONCEPT_ANCESTOR
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createSourceToConceptMapExtended() - Create Extended Source to Concept Map Table
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duckdbToOMOPVocabularyCSVs() - Export vocabulary tables from a database to CSV files
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helper_createATemporaryCopyOfTheOMOPVocabularyDuckDB() - Create a Temporary Copy of the OMOP Vocabulary DuckDB
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omopVocabularyCSVsToDuckDB() - Convert OMOP Vocabulary CSVs to Database
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plotTableMappingStatus() - tableMappingStatus
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plotTableVocabularyStatus() - Plot Table Vocabulary Status
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readUsagiFile() - Read Usagi File
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updateUsagiFile() - Validate Usagi File
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updateVocabularyFolder() - Update Vocabulary Folder
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validateCDMtablesWithDQD() - Validate CDM Tables Using Data Quality Dashboard
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validateCodeCountsFile() - Validate Code Counts Folder
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validateCodeCountsFolder() - Validate Code Counts Folder
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validateUsagiFile() - Validate Usagi File
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validateVocabularyFolder() - Validate Vocabulary Folder
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vocabularyFolderToSTCMVocabularyConcepClassTables() - Upload Vocabulary Folder to CDM Tables
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writeUsagiFile() - Write a Usagi mapping file