Run All Validation and Upload Steps

Runs the complete workflow of validating vocabulary files and uploading them to CDM tables. It performs the following steps:

1. Validate the vocabulary folder

2. If sourceToConceptMapTable is not NULL, create the SourceToConceptMap table

3. Upload the vocabulary.csv and Usagi files to the SourceToConceptMap table

4. Move the SourceToConceptMap table to the CDM table

5. Validate the CDM tables with DQD

Usage

buildVocabulariesAll(
  pathToVocabularyFolder,
  connectionDetails,
  vocabularyDatabaseSchema,
  validationResultsFolder,
  sourceToConceptMapTable = NULL
)

Arguments

pathToVocabularyFolder

Path to folder containing vocabulary files

connectionDetails

DatabaseConnector connection details object

vocabularyDatabaseSchema

Schema containing the vocabulary tables

validationResultsFolder

Folder where validation results will be saved

sourceToConceptMapTable

Optional name of source to concept map table