autoFixDatabaseCodeCountTable

Automatically fixes issues in the database code count table.

Usage

autoFixDatabaseCodeCountsFile(
  pathToCodeCountsFile,
  pathToCodeCountsFileFixed = pathToCodeCountsFile,
  keepOnlySourceVocabularyIds = NULL
)

Arguments

pathToCodeCountsFile

Path to the CSV file containing the database code counts.

pathToCodeCountsFileFixed

Path where the fixed CSV file should be saved. Defaults to overwriting the input file.

keepOnlySourceVocabularyIds

Vector of source vocabulary IDs to keep. Other source vocabularies will be removed. If NULL, keeps all vocabularies.

Value

Tibble containing the fixed database code count table.

Details

This function performs the following fixes on the provided database code count table:

1. Removes unused source vocabularies based on the specified keep_only_source_vocabulary_ids.

2. Sums up repeated values for the same source vocabulary and source code.

3. Removes events with a count less than 5.