This table summarizes the current status of the FimOMOP mapping
repository.
Each row shows a Vocabulary. If it is
Maintaned by OMOP, FinnOMOP, or OMOP+FinnOMOP for a
combination of both. Mapping progress shows the proportion
of codes in a vocabulary that have been mapped to one or more
OMOP-standard concepts.
Following columns, shows how well the vocabulary covers the events in
different databases. Last column is a combination of all the databases.
A code used in a clinical event may fall in one of the following
categories:
Events
with standard code: the code exist in the target vocabulary and
is mapped to an OMOP-standard concept.
Events
with non-standard code: the code exist in the target vocabulary
but is not yet mapped to an OMOP-standard concept
Events
with not found code: the code do not exist in the target
vocabulary.
Exactly what events fall in each category can be explored by
selecting the vocabulary’s tab over the main table.
Hover over the bars to see details.
Column
Summary
ATC
FGVisitType
ICD10fi
OMOP Tables Validation
Sidebar
Description
This table shows the results from the DataQualityDashboard applied to
the OMOP vocabulary tables. It checks that the modified OMOP vocabulary
tables maintain the conformance and plausibility rules defined by the
CDM definitions.
Column
Summary
USAGI Tables Validation
Sidebar
Description
This table shows the quality checks done in the usagi mapping files.
This helps to the source of a possible error in the “OMOP Tables
Validation”
The Summary tab shows a summary of the input vocabularies and if they
have any failed rules, n_failed_rules column.
Additionally, there is one tab per vocabulary showing the list of
checks (Validation Summary) and the specific rows causing the error if
any (Failed Rules).
Column
Summary
ICD10fi
Validation Summary
Failed Rules
NCSPfi
Validation Summary
Failed Rules
FGVisitType
Validation Summary
Failed Rules
Vocabulary Info Tables Validation
Sidebar
Description
This table shows the quality checks done in the info mapping files.
This helps to the source of a possible error in the “OMOP Tables
Validation”
The Summary tab shows a summary of the input vocabularies and if they
have any failed rules, n_failed_rules column.
Additionally, there is one tab per vocabulary showing the list of
checks (Validation Summary) and the specific rows causing the error if
any (Failed Rules).
Column
Summary
ICD10fi
Validation Summary
Failed Rules
NCSPfi
Validation Summary
Failed Rules
FGVisitType
Validation Summary
Failed Rules
Databases Counts Tables Validation
Sidebar
Description
This table shows the quality checks done in the code_counts
files.
The Summary tab shows a summary of the input databases and if they
have any failed rules, n_failed_rules column.
Additionally, there is one tab per database showing the list of
checks (Validation Summary) and the specific rows causing the error if
any (Failed Rules).